PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13894_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 353aa    MW: 40125.5 Da    PI: 6.1096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13894_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-1861108148
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                           rg+WT eEd ll++++  +G g+W++ a++ g++Rt+k+c++rw++yl
  cra_locus_13894_iso_1_len_1237_ver_3  61 RGPWTLEEDNLLIQYISCHGEGRWNKLAKCAGLKRTGKSCRLRWLNYL 108
                                           89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.14156112IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2258111IPR009057Homeodomain-like
SMARTSM007171.8E-1560110IPR001005SANT/Myb domain
PfamPF002491.1E-1661108IPR001005SANT/Myb domain
SuperFamilySSF466892.12E-2462137IPR009057Homeodomain-like
CDDcd001677.88E-1263108No hitNo description
PROSITE profilePS500905.401109187IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-9112137IPR009057Homeodomain-like
SMARTSM0071767113189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
RPGDSSALCT IGSNHLNFLS LKLSQYYSSK IPTMHNKGFS RNVDSNGNAN EEDSTTVDLR  60
RGPWTLEEDN LLIQYISCHG EGRWNKLAKC AGLKRTGKSC RLRWLNYLKP DIKRGNLTPQ  120
EQLLILELHS KWGNRWSXXX XXXXXXXXXX XXIIGEQGCK NKQDXLNIDS NSRKFLEAIR  180
RYWMPRLLEK VDQNSSLSSS SNSSSNNFSS NSSTENLDHF TAPAPSLLKT HQTSNLQSSI  240
SPNSIKFAET SQSLMTNSNM GSSNSPRKTQ LTAEIVENQT TPVQTYGYND ANKVNSALIQ  300
EEEFSHYHPE MSELFESECQ IEETDWFDDE ISAATLWNMD EFWCFRKPAE AGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-155813724102MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068TWL81e-77A0A068TWL8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154